Shape Analysis

Statistical shape analysis is a key technology in medical image analysis to understand distributions of shapes within a subject group, differences between groups, or differences between a group and an individual subject. Just as for the analysis of time-varying data, a good shape representation is important. We have investigated shape representations that either do not require establishing spatial correspondences (i.e., spectral approaches ( [reuter09] ) which are invariant to isometric transformations - transformations that do not cause local stretching or compression) or only require an initial global alignment, thereby sidestepping the potentially challenging estimation of local correspondences. We have also developed approaches based on object-oriented data analysis, specifically, making use of orderings on shape ( [hong14] [hong15] ). By forming such orderings, rank-order statistical methods can be generalized to shapes (such as the median, percentiles, the interquartile range, outliers). Some of our shape analysis approaches make use of topology, either to define shape features ( [reuter09] ) or for the entire shape analysis framework ( [hofer17] ). See here for a more complete overview of our shape analysis work.


Statistical atlas construction via weighted functional boxplots

Atlas-building from population data is widely used in medical imaging. However, the emphasis of atlas-building approaches is typically …

Marc Niethammer
Marc Niethammer
Professor of Computer Science

My research interests include image registration, image segmentation, shape analysis, machine learning, and biomedical applications.