Publications in Medical Image Analysis Venues

NeuroImage

Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging Near-tubular fiber bundle segmentation for diffusion weighted imaging: Segmentation through frame reorientation Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography Quicksilver: Fast predictive image registration - A deep learning approach

TMI

A Locally Adaptive Regularization Based on Anisotropic Diffusion for Deformable Image Registration of Sliding Organs Diseased Region Detection of Longitudinal Knee Magnetic Resonance Imaging Data Longitudinal Image Registration With Temporally-Dependent Image Similarity Measure Perfusion Imaging: A Data Assimilation Approach PORTR: Pre-Operative and Post-Recurrence Brain Tumor Registration Restoration of DWI Data Using a Rician LMMSE Estimator Simulation-Based Joint Estimation of Body Deformation and Elasticity Parameters for Medical Image Analysis

MEDIA

Automatic atlas-based three-label cartilage segmentation from MR knee images DADP: Dynamic abnormality detection and progression for longitudinal knee magnetic resonance images from the Osteoarthritis Initiative Fast predictive simple geodesic regression Large deformation diffeomorphic registration of diffusion-weighted imaging data Multi-modal registration for correlative microscopy using image analogies Optimal transport features for morphometric population analysis Segmentation with area constraints Shape analysis based on depth-ordering Splines for diffeomorphisms Statistical atlas construction via weighted functional boxplots

MICCAI

A Deep Network for Joint Registration and Reconstruction of Images with Pathologies Anatomical Data Augmentation via Fluid-Based Image Registration Appearance Normalization of Histology Slides Automatic Optic Nerve Sheath Measurement in Point-of-Care Ultrasound Contextual Additive Networks to Efficiently Boost 3D Image Segmentations DeepAtlas: Joint Semi-supervised Learning of Image Registration and Segmentation Depth-Based Shape-Analysis Diffusion Propagator Estimation Using Radial Basis Functions DTI Longitudinal Atlas Construction as an Average of Growth Models Exploratory Population Analysis with Unbalanced Optimal Transport Fast Predictive Image Registration Fast Predictive Simple Geodesic Regression Fiber Bundle Estimation and Parameterization Finsler Tractography for White Matter Connectivity Analysis of the Cingulum Bundle Fluid Registration Between Lung CT and Stationary Chest Tomosynthesis Images Geodesic Regression for Image Time-Series Geodesic-Loxodromes for Diffusion Tensor Interpolation and Difference Measurement Geometric Metamorphosis Geometric-Feature-Based Spectral Graph Matching in Pharyngeal Surface Registration Global Medical Shape Analysis Using the Laplace-Beltrami Spectrum iSegFormer: Interactive Segmentation via Transformers with Application to 3D Knee MR Images Large Deformation Diffeomorphic Registration of Diffusion-Weighted Images Large Deformation Diffeomorphic Registration of Diffusion-Weighted Images with Explicit Orientation Optimization Large Deformation Image Classification Using Generalized Locality-Constrained Linear Coding LiftReg: Limited Angle 2D/3D Deformable Registration Longitudinal Image Registration with Non-uniform Appearance Change Low-Rank to the Rescue - Atlas-Based Analyses in the Presence of Pathologies Memory Efficient LDDMM for Lung CT Metamorphic Geodesic Regression Model Criticism for Regression on the Grassmannian MRIS: A Multi-modal Retrieval Approach for Image Synthesis on Diverse Modalities Multiple Instance Learning for Heterogeneous Images: Training a CNN for Histopathology Outlier Rejection for Diffusion Weighted Imaging Patient-Specific Registration of Pre-operative and Post-recurrence Brain Tumor MRI Scans PIANO: Perfusion Imaging via Advection-Diffusion Prediction-driven Respiratory Motion Atlas Formation for 4D Image-guided Radiation Therapy in Lung Registration of Pathological Images Riemannian metrics for statistics on shapes: parallel transport and scale invariance Robust model-based transformation and averaging of diffusion weighted images - applied to diffusion weighted atlas construction Robust Multimodal Dictionary Learning Sliding Geometries in Deformable Image Registration Sparse Scale-Space Decomposition of Volume Changes in Deformations Fields Spatial Component Analysis to Mitigate Multiple Testing in Voxel-Based Analysis Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data - Second International Workshop, STIA 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 1, 2012. Proceedings Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data - Third International Workshop, STIA 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 18, 2014, Revised Selected Papers Splines for Diffeomorphic Image Regression Studying Cerebral Vasculature Using Structure Proximity and Graph Kernels The Endoscopogram: A 3D Model Reconstructed from Endoscopic Video Frames Time-Warped Geodesic Regression Topological Descriptors of Histology Images Tubular Surface Evolution for Segmentation of the Cingulum Bundle from DW-MRI Uncertainty Quantification for LDDMM Using a Low-Rank Hessian Approximation Unsupervised Discovery of 3D Hierarchical Structure with Generative Diffusion Features VoteNet: A Deep Learning Label Fusion Method for Multi-atlas Segmentation Weighted Functional Boxplot with Application to Statistical Atlas Construction

IPMI

Constructing Shape Spaces from a Topological Perspective Cortical Correspondence with Probabilistic Fiber Connectivity Diseased Region Detection of Longitudinal Knee MRI Data Group Testing for Longitudinal Data Group-Wise Cortical Correspondence via Sulcal Curve-Constrained Entropy Minimization Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Boone, NC, USA, June 25-30, 2017, Proceedings Orthotropic Thin Shell Elasticity Estimation for Surface Registration

ISBI

A Method for Normalizing Histology Slides for Quantitative Analysis A pediatric airway atlas and its application in subglottic stenosis Automatic multi-atlas-based cartilage segmentation from knee MR images Automatic three-label bone segmentation from knee MR images Deformable image registration of sliding organs using anisotropic diffusive regularization Efficient registration of pathological images: A joint PCA/image-reconstruction approach Fast predictive multimodal image registration Hierarchical task-driven feature learning for tumor histology Longitudinal three-label segmentation of knee cartilage Physically-based deformable image registration with material property and boundary condition estimation Scoliosis screening and monitoring using self contained ultrasound and neural networks Semi-coupled dictionary learning for deformation prediction Statistical Shape Analysis of Brain Structures Using Spherical Wavelets Ultrasound spectroscopy Votenet++: Registration Refinement For Multi-Atlas Segmentation Votenet+: An Improved Deep Learning Label Fusion Method for Multi-Atlas Segmentation