Latest

• GradICON Registration
• Qin Liu, Meng Zheng, Benjamin Planche, Zhongpai Gao, Terrence Chen, Marc Niethammer, Ziyan Wu (2023). Exploring Cycle Consistency Learning in Interactive Volume Segmentation. CoRR.

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• Lin Tian, Hastings Greer, François-Xavier Vialard, Roland Kwitt, Raúl San José Estépar, Marc Niethammer (2023). GradICON: Approximate Diffeomorphisms via Gradient Inverse Consistency. CVPR.

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• Hastings Greer, Lin Tian, François-Xavier Vialard, Roland Kwitt, Sylvain Bouix, Raúl San José Estépar, Richard Rushmore, Marc Niethammer (2023). Inverse Consistency by Construction for Multistep Deep Registration. CoRR.

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• Boqi Chen, Marc Niethammer (2023). MRIS: A Multi-modal Retrieval Approach for Image Synthesis on Diverse Modalities. CoRR.

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• Yifeng Shi, Marc Niethammer (2023). Multimodal Understanding Through Correlation Maximization and Minimization. CoRR.

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• Yining Jiao, Carlton J. Zdanski, Julia S. Kimbell, Andrew Prince, Cameron Worden, Samuel Kirse, Christopher Rutter, Benjamin Shields, William Dunn, Jisan Mahmud, Marc Niethammer (2023). NAISR: A 3D Neural Additive Model for Interpretable Shape Representation. CoRR.

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• Samuel Gerber, Marc Niethammer, Ebrahim Ebrahim, Joseph Piven, Stephen R. Dager, Martin Styner, Stephen R. Aylward, Andinet Enquobahrie (2023). Optimal transport features for morphometric population analysis. Medical Image Anal..

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• Nurislam Tursynbek, Marc Niethammer (2023). Unsupervised Discovery of 3D Hierarchical Structure with Generative Diffusion Features. CoRR.

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• Aladdin
• ICON
• OAI Analysis 2
• Pediatric Airway Atlas
• RobOT
• SimpleClick
• YETI
• Yehuda K. Ben-Zikri, María Helguera, David Fetzer, David A. Shrier, Stephen R. Aylward, Deepak Chittajallu, Marc Niethammer, Nathan D. Cahill, Cristian A. Linte (2022). A feature-based affine registration method for capturing background lung tissue deformation for ground glass nodule tracking. Comput. methods Biomech. Biomed. Eng. Imaging Vis..

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• Zhipeng Ding, Marc Niethammer (2022). Aladdin: Joint Atlas Building and Diffeomorphic Registration Learning with Pairwise Alignment. IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2022, New Orleans, LA, USA, June 18-24, 2022.

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• Zhenlin Xu, Marc Niethammer, Colin Raffel (2022). Compositional Generalization in Unsupervised Compositional Representation Learning: A Study on Disentanglement and Emergent Language. NeurIPS.

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• Chao Huang, Zhenlin Xu, Zhengyang Shen, Tianyou Luo, Tengfei Li, Daniel Nissman, Amanda Nelson, Yvonne Golightly, Marc Niethammer, Hongtu Zhu (2022). DADP: Dynamic abnormality detection and progression for longitudinal knee magnetic resonance images from the Osteoarthritis Initiative. Medical Image Anal..

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• Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer (2022). Deep Decomposition for Stochastic Normal-Abnormal Transport. IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2022, New Orleans, LA, USA, June 18-24, 2022.

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• Kichang Kwak, Marc Niethammer, Kelly S Giovanello, Martin Styner, Eran Dayan, Alzheimer's Disease Neuroimaging Initiative, others (2022). Differential Role for hippocampal subfields in Alzheimer’s disease progression revealed with deep learning. Cerebral Cortex.

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• Qin Liu, Zhenlin Xu, Yining Jiao, Marc Niethammer (2022). iSegFormer: Interactive Segmentation via Transformers with Application to 3D Knee MR Images. Medical Image Computing and Computer Assisted Intervention - MICCAI 2022 - 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part V.

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• Lin Tian, Yueh Z. Lee, Raúl San José Estépar, Marc Niethammer (2022). LiftReg: Limited Angle 2D/3D Deformable Registration. Medical Image Computing and Computer Assisted Intervention - MICCAI 2022 - 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part VI.

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• Florian Graf, Sebastian Zeng, Bastian Rieck, Marc Niethammer, Roland Kwitt (2022). On Measuring Excess Capacity in Neural Networks. NeurIPS.

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• Qin Liu, Meng Zheng, Benjamin Planche, Srikrishna Karanam, Terrence Chen, Marc Niethammer, Ziyan Wu (2022). PseudoClick: Interactive Image Segmentation with Click Imitation. Computer Vision - ECCV 2022 - 17th European Conference, Tel Aviv, Israel, October 23-27, 2022, Proceedings, Part VI.

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• Qin Liu, Zhenlin Xu, Gedas Bertasius, Marc Niethammer (2022). SimpleClick: Interactive Image Segmentation with Simple Vision Transformers. CoRR.

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• Susan Wei, Marc Niethammer (2022). The fairness-accuracy Pareto front. Stat. Anal. Data Min..

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• Zhengyang Shen, Jean Feydy, Peirong Liu, Ariel Hernán Curiale, Rubén San José Estépar, Raúl San José Estépar, Marc Niethammer (2021). Accurate Point Cloud Registration with Robust Optimal Transport. Advances in Neural Information Processing Systems 34: Annual Conference on Neural Information Processing Systems 2021, NeurIPS 2021, December 6-14, 2021, virtual.

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• Xu Han, Jun Hong, Marsha Reyngold, Christopher Crane, John Cuaron, Carla Hajj, Justin Mann, Melissa Zinovoy, Hastings Greer, Ellen Yorke, Gig Mageras, Marc Niethammer (2021). Deep-learning-based image registration and automatic segmentation of organs-at-risk in cone-beam CT scans from high-dose radiation treatment of pancreatic cancer. Medical Physics.

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• Peirong Liu, Lin Tian, Yubo Zhang, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer (2021). Discovering Hidden Physics Behind Transport Dynamics. IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2021, virtual, June 19-25, 2021.

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• Florian Graf, Christoph D. Hofer, Marc Niethammer, Roland Kwitt (2021). Dissecting Supervised Constrastive Learning. Proceedings of the 38th International Conference on Machine Learning, ICML 2021, 18-24 July 2021, Virtual Event.

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• Jeffrey T Young, Roza M Vlasova, Brittany R Howell, Rebecca C Knickmeyer, Elyse Morin, Kaela I Kuitchoua, Gabriele R Lubach, Jean Noel, Xiaoping Hu, Yundi Shi, Gibson Caudill, Andrew L Alexander, Marc Niethammer, Merle G Paule, Christopher L Coe, Mar Sanchez, Martin Styner (2021). General anaesthesia during infancy reduces white matter micro-organisation in developing rhesus monkeys. British Journal of Anaesthesia.

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• Hastings Greer, Roland Kwitt, François-Xavier Vialard, Marc Niethammer (2021). ICON: Learning Regular Maps Through Inverse Consistency. 2021 IEEE/CVF International Conference on Computer Vision, ICCV 2021, Montreal, QC, Canada, October 10-17, 2021.

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• Zhipeng Ding, Xu Han, Peirong Liu, Marc Niethammer (2021). Local Temperature Scaling for Probability Calibration. 2021 IEEE/CVF International Conference on Computer Vision, ICCV 2021, Montreal, QC, Canada, October 10-17, 2021.

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• Peirong Liu, Yueh Z Lee, Stephen R Aylward, Marc Niethammer (2021). Perfusion Imaging: An Advection Diffusion Approach. IEEE Transactions on Medical Imaging.

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• Zhenlin Xu, Deyi Liu, Junlin Yang, Colin Raffel, Marc Niethammer (2021). Robust and Generalizable Visual Representation Learning via Random Convolutions. 9th International Conference on Learning Representations, ICLR 2021, Virtual Event, Austria, May 3-7, 2021.

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• Zhipeng Ding, Marc Niethammer (2021). Votenet++: Registration Refinement For Multi-Atlas Segmentation. 18th IEEE International Symposium on Biomedical Imaging, ISBI 2021, Nice, France, April 13-16, 2021.

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• Peirong Liu, Yueh Lee, Stephen Aylward, Marc Niethammer (2020). Perfusion Imaging: A Data Assimilation Approach. Preprint.

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• Shape Analysis
• Local Temperature Scaling
• Mermaid
• VoteNet
• Histology
• Image Registration
• Image Segmentation
• Osteoarthritis
• Pediatric Airway Analysis
• Topology
• Xu Han, Zhengyang Shen, Zhenlin Xu, Spyridon Bakas, Hamed Akbari, Michel Bilello, Christos Davatzikos, Marc Niethammer (2020). A Deep Network for Joint Registration and Reconstruction of Images with Pathologies. Machine Learning in Medical Imaging - 11th International Workshop, MLMI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings.

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• François-Xavier Vialard, Roland Kwitt, Susan Wei, Marc Niethammer (2020). A shooting formulation of deep learning. Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, NeurIPS 2020, December 6-12, 2020, virtual.

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• Sahin Olut, Zhengyang Shen, Zhenlin Xu, Samuel Gerber, Marc Niethammer (2020). Adversarial Data Augmentation via Deformation Statistics. Computer Vision - ECCV 2020 - 16th European Conference, Glasgow, UK, August 23-28, 2020, Proceedings, Part XXIX.

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• Zhengyang Shen, Zhenlin Xu, Sahin Olut, Marc Niethammer (2020). Anatomical Data Augmentation via Fluid-Based Image Registration. Medical Image Computing and Computer Assisted Intervention - MICCAI 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part III.

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• Brad T. Moore, Sean Montgomery, Marc Niethammer, Hastings Greer, Stephen R. Aylward (2020). Automatic Optic Nerve Sheath Measurement in Point-of-Care Ultrasound. Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - First International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4-8, 2020, Proceedings.

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• Andrew Abumoussa, Alex Flores, James Ho, Marc Niethammer, Deanna Sasaki-Adams, Yueh Z Lee (2020). Computational methods for visualizing and measuring verapamil efficacy for cerebral vasospasm. Scientific Reports.

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• Yifeng Shi, Christopher M. Bender, Junier B. Oliva, Marc Niethammer (2020). Deep Goal-Oriented Clustering. CoRR.

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• Yifeng Shi, Junier Oliva, Marc Niethammer (2020). Deep Message Passing on Sets. The Thirty-Fourth AAAI Conference on Artificial Intelligence, AAAI 2020, The Thirty-Second Innovative Applications of Artificial Intelligence Conference, IAAI 2020, The Tenth AAAI Symposium on Educational Advances in Artificial Intelligence, EAAI 2020, New York, NY, USA, February 7-12, 2020.

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• Lin Tian, Connor Puett, Peirong Liu, Zhengyang Shen, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer (2020). Fluid Registration Between Lung CT and Stationary Chest Tomosynthesis Images. Medical Image Computing and Computer Assisted Intervention - MICCAI 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part III.

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• Christoph D. Hofer, Florian Graf, Bastian Rieck, Marc Niethammer, Roland Kwitt (2020). Graph Filtration Learning. Proceedings of the 37th International Conference on Machine Learning, ICML 2020, 13-18 July 2020, Virtual Event.

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• Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer (2020). PIANO: Perfusion Imaging via Advection-Diffusion. Medical Image Computing and Computer Assisted Intervention - MICCAI 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part VII.

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• Samuel Gerber, Marc Niethammer (2020). Spatial Component Analysis to Mitigate Multiple Testing in Voxel-Based Analysis. Medical Image Computing and Computer Assisted Intervention - MICCAI 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part VII.

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• Christoph D. Hofer, Florian Graf, Marc Niethammer, Roland Kwitt (2020). Topologically Densified Distributions. Proceedings of the 37th International Conference on Machine Learning, ICML 2020, 13-18 July 2020, Virtual Event.

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• Zhipeng Ding, Xu Han, Marc Niethammer (2020). Votenet+: An Improved Deep Learning Label Fusion Method for Multi-Atlas Segmentation. 17th IEEE International Symposium on Biomedical Imaging, ISBI 2020, Iowa City, IA, USA, April 3-7, 2020.

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• Christoph D. Hofer, Roland Kwitt, Marc Niethammer, Mandar Dixit (2019). Connectivity-Optimized Representation Learning via Persistent Homology. Proceedings of the 36th International Conference on Machine Learning, ICML 2019, 9-15 June 2019, Long Beach, California, USA.

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• Heather D. Couture, Roland Kwitt, J. S. Marron, Melissa A. Troester, Charles M. Perou, Marc Niethammer (2019). Deep Multi-View Learning via Task-Optimal CCA. CoRR.

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• Zhenlin Xu, Marc Niethammer (2019). DeepAtlas: Joint Semi-supervised Learning of Image Registration and Segmentation. Medical Image Computing and Computer Assisted Intervention - MICCAI 2019 - 22nd International Conference, Shenzhen, China, October 13-17, 2019, Proceedings, Part II.

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• Zhipeng Ding, Greg M. Fleishman, Xiao Yang, Paul Thompson, Roland Kwitt, Marc Niethammer (2019). Fast predictive simple geodesic regression. Medical Image Anal..

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• Deepak Roy Chittajallu, Matthew McCormick, Samuel Gerber, Tomasz J. Czernuszewicz, Ryan C. Gessner, Monte S. Willis, Marc Niethammer, Roland Kwitt, Stephen R. Aylward (2019). Image-Based Methods for Phase Estimation, Gating, and Temporal Superresolution of Cardiac Ultrasound. IEEE Trans. Biomed. Engineering.

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• Iain Carmichael, Benjamin C Calhoun, Katherine A Hoadley, Melissa A Troester, Joseph Geradts, Heather D Couture, Linnea Olsson, Charles M Perou, Marc Niethammer, Jan Hannig, J S Marron (2019). Joint and individual analysis of breast cancer histologic images and genomic covariates. The Annals of Applied Statistics.

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• Christoph D. Hofer, Roland Kwitt, Marc Niethammer (2019). Learning Representations of Persistence Barcodes. J. Mach. Learn. Res..

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• Marc Niethammer, Roland Kwitt, François-Xavier Vialard (2019). Metric Learning for Image Registration. IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2019, Long Beach, CA, USA, June 16-20, 2019.

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• Kevin Pham, Xiao Yang, Marc Niethammer, Juan-Carlos Prieto, Martin Styner (2019). Multiseg pipeline: automatic tissue segmentation of brain MR images with subject-specific atlases. Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging, San Diego, California, United States, 16-21 February 2019.

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• Zhengyang Shen, Xu Han, Zhenlin Xu, Marc Niethammer (2019). Networks for Joint Affine and Non-Parametric Image Registration. IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2019, Long Beach, CA, USA, June 16-20, 2019.

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• Zhengyang Shen, François-Xavier Vialard, Marc Niethammer (2019). Region-specific Diffeomorphic Metric Mapping. Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, NeurIPS 2019, 8-14 December 2019, Vancouver, BC, Canada.

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• Natalie Stanley, Thomas Bonacci, Roland Kwitt, Marc Niethammer, Peter J. Mucha (2019). Stochastic block models with multiple continuous attributes. Applied Network Science.

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• Zhipeng Ding, Xu Han, Marc Niethammer (2019). VoteNet: A Deep Learning Label Fusion Method for Multi-atlas Segmentation. Medical Image Computing and Computer Assisted Intervention - MICCAI 2019 - 22nd International Conference, Shenzhen, China, October 13-17, 2019, Proceedings, Part III.

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• Yu Zhao, Hongwei Li, Rong Zhou, Giles Tetteh, Marc Niethammer, Bjoern H. Menze (2018). Automatic Multi-Atlas Segmentation for Abdominal Images Using Template Construction and Robust Principal Component Analysis. 24th International Conference on Pattern Recognition, ICPR 2018, Beijing, China, August 20-24, 2018.

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• Xu Han, Roland Kwitt, Stephen R. Aylward, Spyridon Bakas, Bjoern H. Menze, Alexander Asturias, Paul M. Vespa, John D. Van Horn, Marc Niethammer (2018). Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach. NeuroImage.

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• Zhenlin Xu, Zhengyang Shen, Marc Niethammer (2018). Contextual Additive Networks to Efficiently Boost 3D Image Segmentations. Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support - 4th International Workshop, DLMIA 2018, and 8th International Workshop, ML-CDS 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 20, 2018, Proceedings.

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• Samuel Gerber, Marc Niethammer, Martin Styner, Stephen R. Aylward (2018). Exploratory Population Analysis with Unbalanced Optimal Transport. Medical Image Computing and Computer Assisted Intervention - MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part III.

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• Heather D. Couture, Lindsay A. Williams, Joseph Geradts, Sarah J. Nyante, Ebonee N. Butler, J. S. Marron, Charles M. Perou, Melissa A. Troester, Marc Niethammer (2018). Image analysis with deep learning to predict breast cancer grade, ER status, histologic subtype, and intrinsic subtype. NPJ breast cancer.

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• Heather D. Couture, Lindsay A. Williams, Joseph Geradts, Sarah J. Nyante, Ebonee N. Butler, J. S. Marron, Charles M. Perou, Melissa A. Troester, Marc Niethammer (2018). Image analysis with deep learning to predict breast cancer grade, ER status, histologic subtype, and intrinsic subtype. NPJ breast cancer.

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• Heather D. Couture, J. S. Marron, Charles M. Perou, Melissa A. Troester, Marc Niethammer (2018). Multiple Instance Learning for Heterogeneous Images: Training a CNN for Histopathology. Medical Image Computing and Computer Assisted Intervention - MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part II.

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• Xu Han, Spyridon Bakas, Roland Kwitt, Stephen R. Aylward, Hamed Akbari, Michel Bilello, Christos Davatzikos, Marc Niethammer (2018). Patient-Specific Registration of Pre-operative and Post-recurrence Brain Tumor MRI Scans. Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Revised Selected Papers, Part I.

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• Hastings Greer, Samuel Gerber, Marc Niethammer, Roland Kwitt, Matt McCormick, Deepak Roy Chittajallu, Neal Siekierski, Matthew Oetgen, Kevin Cleary, Stephen R. Aylward (2018). Scoliosis screening and monitoring using self contained ultrasound and neural networks. 15th IEEE International Symposium on Biomedical Imaging, ISBI 2018, Washington, DC, USA, April 4-7, 2018.

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• Natalie Stanley, Marc Niethammer, Peter J. Mucha (2018). Testing Alignment of Node Attributes with Network Structure Through Label Propagation. CoRR.

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• Marc Niethammer, Kilian M. Pohl, Firdaus Janoos, William M. Wells III (2017). Active Mean Fields for Probabilistic Image Segmentation: Connections with Chan-Vese and Rudin-Osher-Fatemi Models. SIAM J. Imaging Sciences.

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• Mandar Dixit, Roland Kwitt, Marc Niethammer, Nuno Vasconcelos (2017). AGA: Attribute-Guided Augmentation. 2017 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017, Honolulu, HI, USA, July 21-26, 2017.

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• Natalie Stanley, Roland Kwitt, Marc Niethammer, Peter J. Mucha (2017). Compressing networks with super nodes. CoRR.

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• Christoph D. Hofer, Roland Kwitt, Marc Niethammer, Yvonne Höller, Eugen Trinka, Andreas Uhl (2017). Constructing Shape Spaces from a Topological Perspective. Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Boone, NC, USA, June 25-30, 2017, Proceedings.

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• Christoph D. Hofer, Roland Kwitt, Marc Niethammer, Andreas Uhl (2017). Deep Learning with Topological Signatures. Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017, 4-9 December 2017, Long Beach, CA, USA.

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• Xu Han, Xiao Yang, Stephen R. Aylward, Roland Kwitt, Marc Niethammer (2017). Efficient registration of pathological images: A joint PCA/image-reconstruction approach. 14th IEEE International Symposium on Biomedical Imaging, ISBI 2017, Melbourne, Australia, April 18-21, 2017.

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• Xiao Yang, Roland Kwitt, Martin Styner, Marc Niethammer (2017). Fast predictive multimodal image registration. 14th IEEE International Symposium on Biomedical Imaging, ISBI 2017, Melbourne, Australia, April 18-21, 2017.

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• Zhipeng Ding, Greg M. Fleishman, Xiao Yang, Paul Thompson, Roland Kwitt, Marc Niethammer (2017). Fast Predictive Simple Geodesic Regression. Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support - Third International Workshop, DLMIA 2017, and 7th International Workshop, ML-CDS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 14, 2017, Proceedings.

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• Marc Niethammer, Martin Styner, Stephen R. Aylward, Hongtu Zhu, Ipek Oguz, Pew-Thian Yap, Dinggang Shen (2017). Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Boone, NC, USA, June 25-30, 2017, Proceedings. Springer.

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• Emilie Gerardin, Gaël Chételat, Marie Chupin, Rémi Cuingnet, Béatrice Desgranges, Hosung Kim, Marc Niethammer, Bruno Dubois, Stéphane Lehéricy, Line Garnero, Francis Eustache, Olivier Colliot (2017). Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. CoRR.

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• Qingyu Zhao, Stephen M. Pizer, Ron Alterovitz, Marc Niethammer, Julian G. Rosenman (2017). Orthotropic Thin Shell Elasticity Estimation for Surface Registration. Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Boone, NC, USA, June 25-30, 2017, Proceedings.

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• Demian Wassermann, Matthew Toews, Marc Niethammer, William M. Wells III (2017). Probabilistic Diffeomorphic Registration: Representing Uncertainty. CoRR.

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• Xiao Yang, Roland Kwitt, Martin Styner, Marc Niethammer (2017). Quicksilver: Fast predictive image registration - A deep learning approach. NeuroImage.

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• Yi Hong, Xiao Yang, Roland Kwitt, Martin Styner, Marc Niethammer (2017). Regression Uncertainty on the Grassmannian. Proceedings of the 20th International Conference on Artificial Intelligence and Statistics, AISTATS 2017, 20-22 April 2017, Fort Lauderdale, FL, USA.

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• Jeffrey T. Young, Yundi Shi, Marc Niethammer, Michael Grauer, Christopher L. Coe, Gabriele R. Lubach, Bradley Davis, Francois Budin, Rebecca C. Knickmeyer, Andrew L. Alexander, Martin A. Styner (2017). The UNC-Wisconsin Rhesus Macaque Neurodevelopment Database: A Structural MRI and DTI Database of Early Postnatal Development. Frontiers in Neuroscience.

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• Xiao Yang, Roland Kwitt, Marc Niethammer (2016). Fast Predictive Image Registration. Deep Learning and Data Labeling for Medical Applications - First International Workshop, LABELS 2016, and Second International Workshop, DLMIA 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 21, 2016, Proceedings.

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• Thomas Polzin, Marc Niethammer, Mattias P. Heinrich, Heinz Handels, Jan Modersitzki (2016). Memory Efficient LDDMM for Lung CT. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part III.

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• Roland Kwitt, Sebastian Hegenbart, Marc Niethammer (2016). One-Shot Learning of Scene Locations via Feature Trajectory Transfer. 2016 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2016, Las Vegas, NV, USA, June 27-30, 2016.

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• Yi Hong, Roland Kwitt, Nikhil Singh, Nuno Vasconcelos, Marc Niethammer (2016). Parametric Regression on the Grassmannian. IEEE Trans. Pattern Anal. Mach. Intell..

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• Istvan Csapo, Yundi Shi, Mar Sanchez, Martin Styner, Marc Niethammer (2016). Registration of Developmental Image Sequences with Missing Data. 2016 IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPR Workshops 2016, Las Vegas, NV, USA, June 26 - July 1, 2016.

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• Xiao Yang, Xu Han, Eunbyung Park, Stephen R. Aylward, Roland Kwitt, Marc Niethammer (2016). Registration of Pathological Images. Simulation and Synthesis in Medical Imaging - First International Workshop, SASHIMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 21, 2016, Proceedings.

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• Qingyu Zhao, True Price, Stephen M. Pizer, Marc Niethammer, Ron Alterovitz, Julian G. Rosenman (2016). The Endoscopogram: A 3D Model Reconstructed from Endoscopic Video Frames. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part I.

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• Stephen R. Aylward, Matthew McCormick, H. J. Kang, Sharif Razzaque, Roland Kwitt, Marc Niethammer (2016). Ultrasound spectroscopy. 13th IEEE International Symposium on Biomedical Imaging, ISBI 2016, Prague, Czech Republic, April 13-16, 2016.

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• Jared Vicory, Heather D. Couture, Nancy E. Thomas, David Borland, J. S. Marron, John T. Woosley, Marc Niethammer (2015). Appearance normalization of histology slides. Comput. Medical Imaging Graph..

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• Chao Huang, Liang Shan, Cecil Charles, Wolfgang Wirth, Marc Niethammer, Hongtu Zhu (2015). Diseased Region Detection of Longitudinal Knee Magnetic Resonance Imaging Data. IEEE Trans. Medical Imaging.

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• Yi Hong, Nikhil Singh, Roland Kwitt, Marc Niethammer (2015). Group Testing for Longitudinal Data. Information Processing in Medical Imaging - 24th International Conference, IPMI 2015, Sabhal Mor Ostaig, Isle of Skye, UK, June 28 - July 3, 2015, Proceedings.

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• Heather D. Couture, J. S. Marron, Nancy E. Thomas, Charles M. Perou, Marc Niethammer (2015). Hierarchical task-driven feature learning for tumor histology. 12th IEEE International Symposium on Biomedical Imaging, ISBI 2015, Brooklyn, NY, USA, April 16-19, 2015.

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• Xiaoxiao Liu, Marc Niethammer, Roland Kwitt, Nikhil Singh, Matt McCormick, Stephen Aylward (2015). Low-rank atlas image analyses in the presence of pathologies. IEEE transactions on medical imaging.

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• Yi Hong, Roland Kwitt, Marc Niethammer (2015). Model Criticism for Regression on the Grassmannian. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5 - 9, 2015, Proceedings, Part III.

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• Carlton J. Zdanski, Stephanie D. Davis, Yi Hong, Di Miao, Cory Quammen, Sorin Mitran, Bradley Davis, Marc Niethammer, Julia S. Kimbell, Elizabeth Pitkin, Jason Fine, Lynn Fordham, Bradley Vaughn, Richard Superfine (2015). Quantitative assessment of the upper airway in infants and children with subglottic stenosis. The Laryngoscope.

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• Ilwoo Lyu, Sun H. Kim, Joon-Kyung Seong, Sang W. Yoo, Alan Evans, Yundi Shi, Mar Sanchez, Marc Niethammer, Martin A. Styner (2015). Robust estimation of group-wise cortical correspondence with an application to macaque and human neuroimaging studies. Frontiers in Neuroscience.

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• Joseph Tighe, Marc Niethammer, Svetlana Lazebnik (2015). Scene Parsing with Object Instance Inference Using Regions and Per-exemplar Detectors. Int. J. Comput. Vis..

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• Tian Cao, Nikhil Singh, Vladimir Jojic, Marc Niethammer (2015). Semi-coupled dictionary learning for deformation prediction. 12th IEEE International Symposium on Biomedical Imaging, ISBI 2015, Brooklyn, NY, USA, April 16-19, 2015.

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• Yi Hong, Yi Gao, Marc Niethammer, Sylvain Bouix (2015). Shape analysis based on depth-ordering. Medical Image Anal..

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• Stanley Durrleman, Tom Fletcher, Guido Gerig, Marc Niethammer, Xavier Pennec (2015). Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data - Third International Workshop, STIA 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 18, 2014, Revised Selected Papers. Springer.

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• Nikhil Singh, François-Xavier Vialard, Marc Niethammer (2015). Splines for diffeomorphisms. Medical Image Anal..

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• Roland Kwitt, Stefan Huber, Marc Niethammer, Weili Lin, Ulrich Bauer (2015). Statistical Topological Data Analysis - A Kernel Perspective. Advances in Neural Information Processing Systems 28: Annual Conference on Neural Information Processing Systems 2015, December 7-12, 2015, Montreal, Quebec, Canada.

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• Qingyu Zhao, James Price, Stephen M. Pizer, Marc Niethammer, Ron Alterovitz, Julian G. Rosenman (2015). Surface Registration in the Presence of Missing Patches and Topology Change. Medical Image Understanding and Analysis - MIUA 2015. 19th Annual Conference, University of Lincoln, Lincoln, UK, July 15-17, 2015.

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• Xiao Yang, Marc Niethammer (2015). Uncertainty Quantification for LDDMM Using a Low-Rank Hessian Approximation. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5-9, 2015, Proceedings, Part II.

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• Liang Shan, Christopher Zach, Cecil Charles, Marc Niethammer (2014). Automatic atlas-based three-label cartilage segmentation from MR knee images. Medical Image Anal..

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• Yi Hong, Yi Gao, Marc Niethammer, Sylvain Bouix (2014). Depth-Based Shape-Analysis. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part III.

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• Yi Hong, Roland Kwitt, Nikhil Singh, Brad Davis, Nuno Vasconcelos, Marc Niethammer (2014). Geodesic Regression on the Grassmannian. Computer Vision - ECCV 2014 - 13th European Conference, Zurich, Switzerland, September 6-12, 2014, Proceedings, Part II.

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• Qingyu Zhao, Stephen M. Pizer, Marc Niethammer, Julian G. Rosenman (2014). Geometric-Feature-Based Spectral Graph Matching in Pharyngeal Surface Registration. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part I.

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• Pei Zhang, Marc Niethammer, Dinggang Shen, Pew-Thian Yap (2014). Large deformation diffeomorphic registration of diffusion-weighted imaging data. Medical Image Anal..

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• Xiaoxiao Liu, Marc Niethammer, Roland Kwitt, Matthew McCormick, Stephen R. Aylward (2014). Low-Rank to the Rescue - Atlas-Based Analyses in the Presence of Pathologies. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part III.

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• Tian Cao, Christopher Zach, Shannon Modla, Debbie Powell, Kirk Czymmek, Marc Niethammer (2014). Multi-modal registration for correlative microscopy using image analogies. Medical Image Anal..

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• Dongjin Kwon, Marc Niethammer, Hamed Akbari, Michel Bilello, Christos Davatzikos, Kilian M. Pohl (2014). PORTR: Pre-Operative and Post-Recurrence Brain Tumor Registration. IEEE Trans. Medical Imaging.

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• Demian Wassermann, Matthew Toews, Marc Niethammer, William M. Wells III (2014). Probabilistic Diffeomorphic Registration: Representing Uncertainty. Biomedical Image Registration - 6th International Workshop, WBIR 2014, London, UK, July 7-8, 2014. Proceedings.

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• Joseph Tighe, Marc Niethammer, Svetlana Lazebnik (2014). Scene Parsing with Object Instances and Occlusion Ordering. 2014 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2014, Columbus, OH, USA, June 23-28, 2014.

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• Nikhil Singh, Marc Niethammer (2014). Splines for Diffeomorphic Image Regression. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part II.

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• Yi Hong, Brad Davis, J. S. Marron, Roland Kwitt, Nikhil Singh, Julia S. Kimbell, Elizabeth Pitkin, Richard Superfine, Stephanie Davis, Carlton J. Zdanski, Marc Niethammer (2014). Statistical atlas construction via weighted functional boxplots. Medical Image Anal..

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• Yi Hong, Nikhil Singh, Roland Kwitt, Marc Niethammer (2014). Time-Warped Geodesic Regression. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part II.

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• Nikhil Singh, Heather D. Couture, J. S. Marron, Charles M. Perou, Marc Niethammer (2014). Topological Descriptors of Histology Images. Machine Learning in Medical Imaging - 5th International Workshop, MLMI 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 14, 2014. Proceedings.

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• Danielle F. Pace, Stephen R. Aylward, Marc Niethammer (2013). A Locally Adaptive Regularization Based on Anisotropic Diffusion for Deformable Image Registration of Sliding Organs. IEEE Trans. Medical Imaging.

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• William K. Funkhouser, Marc Niethammer, Johnny L. Carson, Kimberlie A Burns, Michael R. Knowles, Margaret W. Leigh, Maimoona A. Zariwala, William K. Funkhouser (2013). A new tool improves diagnostic test performance for transmission EM evaluation of axonemal dynein arms.. Ultrastructural Pathology.

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• Yi Hong, Marc Niethammer, Johan Andruejol, Julia S. Kimbell, Elizabeth Pitkin, Richard Superfine, Stephanie Davis, Carlton J. Zdanski, Brad Davis (2013). A pediatric airway atlas and its application in subglottic stenosis. 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2013, 7-11 April, 2013, San Francisco, CA, USA, Proceedings.

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• Ilwoo Lyu, Sun Hyung Kim, Joon-Kyung Seong, Sang Wook Yoo, Alan C. Evans, Yundi Shi, Mar Sanchez, Marc Niethammer, Martin A. Styner (2013). Cortical correspondence via sulcal curve-constrained spherical registration with application to Macaque studies. Medical Imaging 2013: Image Processing, Lake Buena Vista (Orlando Area), Florida, USA, February 10-12, 2013.

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• Yogesh Rathi, Marc Niethammer, Frederik B. Laun, Kawin Setsompop, Oleg V. Michailovich, P. Ellen Grant, Carl-Fredrik Westin (2013). Diffusion Propagator Estimation Using Radial Basis Functions. Computational Diffusion MRI and Brain Connectivity, MICCAI Workshops CDMRI/MMBC, Nagoya, Japan, September 22nd, 2013.

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• Chao Huang, Liang Shan, Cecil Charles, Marc Niethammer, Hongtu Zhu (2013). Diseased Region Detection of Longitudinal Knee MRI Data. Information Processing in Medical Imaging - 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28-July 3, 2013. Proceedings.

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• Ilwoo Lyu, Sun Hyung Kim, Joon-Kyung Seong, Sang Wook Yoo, Alan C. Evans, Yundi Shi, Mar Sanchez, Marc Niethammer, Martin Andreas Styner (2013). Group-Wise Cortical Correspondence via Sulcal Curve-Constrained Entropy Minimization. Information Processing in Medical Imaging - 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28-July 3, 2013. Proceedings.

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• Pei Zhang, Marc Niethammer, Dinggang Shen, Pew-Thian Yap (2013). Large Deformation Diffeomorphic Registration of Diffusion-Weighted Images with Explicit Orientation Optimization. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II.

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• Pei Zhang, Chong-Yaw Wee, Marc Niethammer, Dinggang Shen, Pew-Thian Yap (2013). Large Deformation Image Classification Using Generalized Locality-Constrained Linear Coding. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part I.

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• Istvan Csapo, Brad Davis, Yundi Shi, Mar Sanchez, Martin Styner, Marc Niethammer (2013). Longitudinal Image Registration With Temporally-Dependent Image Similarity Measure. IEEE Trans. Medical Imaging.

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• Liang Shan, Cecil Charles, Marc Niethammer (2013). Longitudinal three-label segmentation of knee cartilage. 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2013, 7-11 April, 2013, San Francisco, CA, USA, Proceedings.

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• Marc Niethammer, Francois-Xavier Vialard (2013). Riemannian metrics for statistics on shapes: parallel transport and scale invariance. Proceedings of the 4th MICCAI workshop on Mathematical Foundations of Computational Anatomy (MFCA).

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• Tian Cao, Vladimir Jojic, Shannon Modla, Debbie Powell, Kirk Czymmek, Marc Niethammer (2013). Robust Multimodal Dictionary Learning. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part I.

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• Marc Niethammer, Christopher Zach (2013). Segmentation with area constraints. Medical Image Anal..

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• Marco Lorenzi, Bjoern H. Menze, Marc Niethammer, Nicholas Ayache, Xavier Pennec (2013). Sparse Scale-Space Decomposition of Volume Changes in Deformations Fields. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II.

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• Roland Kwitt, Danielle F. Pace, Marc Niethammer, Stephen R. Aylward (2013). Studying Cerebral Vasculature Using Structure Proximity and Graph Kernels. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II.

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• Yi Hong, Brad Davis, J. S. Marron, Roland Kwitt, Marc Niethammer (2013). Weighted Functional Boxplot with Application to Statistical Atlas Construction. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part III.

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• Liang Shan, Cecil Charles, Marc Niethammer (2012). Automatic atlas-based three-label cartilage segmentation from MR knee images. 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, MMBIA 2012, Breckenridge, CO, USA, January 9-10, 2012.

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• Liang Shan, Cecil Charles, Marc Niethammer (2012). Automatic multi-atlas-based cartilage segmentation from knee MR images. 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.

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• Jason Miedema, J. S. Marron, Marc Niethammer, David Borland, Joseph Woosley, Jason Coposky, Susan Wei, Nancy E. Thomas (2012). Image and Statistical Analysis of Melanocytic Histology. Histopathology.

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• Pei Zhang, Marc Niethammer, Dinggang Shen, Pew-Thian Yap (2012). Large Deformation Diffeomorphic Registration of Diffusion-Weighted Images. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012 - 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part II.

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• Istvan Csapo, Brad Davis, Yundi Shi, Mar Sanchez, Martin Styner, Marc Niethammer (2012). Longitudinal Image Registration with Non-uniform Appearance Change. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012 - 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part III.

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• Jur van den Berg, David Wilkie, Stephen J. Guy, Marc Niethammer, Dinesh Manocha (2012). LQG-obstacles: Feedback control with collision avoidance for mobile robots with motion and sensing uncertainty. IEEE International Conference on Robotics and Automation, ICRA 2012, 14-18 May, 2012, St. Paul, Minnesota, USA.

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• Yi Hong, Sarang C. Joshi, Mar Sanchez, Martin Styner, Marc Niethammer (2012). Metamorphic Geodesic Regression. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012 - 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part III.

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• Tian Cao, Christopher Zach, Shannon Modla, Debbie Powell, Kirk Czymmek, Marc Niethammer (2012). Registration for Correlative Microscopy Using Image Analogies. Biomedical Image Registration - 5th International Workshop, WBIR 2012, Nashville, TN, USA, July 7-8, 2012. Proceedings.

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• Yi Hong, Yundi Shi, Martin Styner, Mar Sanchez, Marc Niethammer (2012). Simple Geodesic Regression for Image Time-Series. Biomedical Image Registration - 5th International Workshop, WBIR 2012, Nashville, TN, USA, July 7-8, 2012. Proceedings.

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• Huai-Ping Lee, Mark Foskey, Marc Niethammer, Pavel Krajcevski, Ming C. Lin (2012). Simulation-Based Joint Estimation of Body Deformation and Elasticity Parameters for Medical Image Analysis. IEEE Trans. Medical Imaging.

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• Stanley Durrleman, Tom Fletcher, Guido Gerig, Marc Niethammer (2012). Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data - Second International Workshop, STIA 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 1, 2012. Proceedings. Springer.

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• Istvan Csapo, Brad Davis, Yundi Shi, Mar Sanchez, Martin Styner, Marc Niethammer (2012). Temporally-Dependent Image Similarity Measure for Longitudinal Analysis. Biomedical Image Registration - 5th International Workshop, WBIR 2012, Nashville, TN, USA, July 7-8, 2012. Proceedings.

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• Wen Li, Luis Ibáñez, Arnaud Gelas, B. T. Thomas Yeo, Marc Niethammer, Nancy Andreasen, Vincent A. Magnotta (2011). An automated pipeline for cortical surface generation and registration of the cerebral cortex. Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida, USA, February 14-16, 2011.

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• Ilknur Kabul, Stephen M. Pizer, Julian G. Rosenman, Marc Niethammer (2011). An Optimal Control Approach for Texture Metamorphosis. Comput. Graph. Forum.

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• Joohwi Lee, Cindy Ehlers, Fulton Crews, Marc Niethammer, François Budin, Beatriz Paniagua, Kathy Sulik, Josephine Johns, Martin Styner, Ipek Oguz (2011). Automatic cortical thickness analysis on rodent brain. Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida, USA, February 14-16, 2011.

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• Danielle F. Pace, Andinet Enquobahrie, Hua Yang, Stephen R. Aylward, Marc Niethammer (2011). Deformable image registration of sliding organs using anisotropic diffusive regularization. Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2011, March 30 - April 2, 2011, Chicago, Illinois, USA.

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• Marc Niethammer, Yang Huang, François-Xavier Vialard (2011). Geodesic Regression for Image Time-Series. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011 - 14th International Conference, Toronto, Canada, September 18-22, 2011, Proceedings, Part II.

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• Marc Niethammer, Gabriel L. Hart, Danielle F. Pace, Paul M. Vespa, Andrei Irimia, John D. Van Horn, Stephen R. Aylward (2011). Geometric Metamorphosis. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011 - 14th International Conference, Toronto, Canada, September 18-22, 2011, Proceedings, Part II.

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• Clement Vachet, Heather Cody Hazlett, Marc Niethammer, Ipek Oguz, Joshua E. Cates, Ross T. Whitaker, Joseph Piven, Martin Styner (2011). Group-wise automatic mesh-based analysis of cortical thickness. Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida, USA, February 14-16, 2011.

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• Mark Walterfang, Jeffrey C. L. Looi, Martin Styner, Ruth H. Walker, Adrian Danek, Marc Niethammer, Andrew Evans, Katya Kotschet, Guilherme R. Rodrigues, Andrew Hughes, Dennis Velakoulis (2011). Shape alterations in the striatum in chorea-acanthocytosis. Psychiatry Research: NeuroImaging.

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• Jeffrey C. L. Looi, Mark Walterfang, Martin Styner, Marc Niethammer, Leif Svensson, Olof Lindberg, Per Ostberg, Lisa Botes, Eva Orndahl, Phyllis Chua, Dennis Velakoulis, Lars-Oluf Wahlund (2011). Shape analysis of the neostriatum in subtypes of frontotemporal lobar degeneration: neuroanatomically significant regional morphologic change. Psychiatry Research - Neuroimaging.

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• Danielle F. Pace, Marc Niethammer, Stephen R. Aylward (2011). Sliding Geometries in Deformable Image Registration. Abdominal Imaging. Computational and Clinical Applications - Third International Workshop, Held in Conjunction with MICCAI 2011, Toronto, ON, Canada, September 18, 2011, Revised Selected Papers.

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• Jeffrey Caplan, Marc Niethammer, Russell M Taylor II, Kirk J Czymmek (2011). The power of correlative microscopy: multi-modal, multi-scale, multi-dimensional. Current Opinion in Structural Biology.

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• Marc Niethammer, David Borland, J. S. Marron, John T. Woosley, Nancy E. Thomas (2010). Appearance Normalization of Histology Slides. Machine Learning in Medical Imaging, First International Workshop, MLMI 2010, Held in Conjunction with MICCAI 2010, Beijing, China, September 20, 2010. Proceedings.

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• Florian Kerber, Helge Sprenger, Marc Niethammer, Kritsakorn Luangvilai, Laurence J. Jacobs (2010). Attenuation Analysis of Lamb Waves Using the Chirplet Transform. EURASIP J. Adv. Signal Process..

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• Liang Shan, Christopher Zach, Martin Styner, Cecil Charles, Marc Niethammer (2010). Automatic bone segmentation and alignment from MR knee images. Medical Imaging 2010: Image Processing, San Diego, California, USA, February 14-16, 2010.

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• Liang Shan, Christopher Zach, Marc Niethammer (2010). Automatic three-label bone segmentation from knee MR images. Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April, 2010.

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• Marc Niethammer, Alexis Boucharin, Christopher Zach, Yundi Shi, Eric Maltbie, Mar Sanchez, Martin Styner (2010). DTI Connectivity by Segmentation. Medical Imaging and Augmented Reality - 5th International Workshop, MIAR 2010, Beijing, China, September 19-20, 2010. Proceedings.

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• Gabriel Hart, Yundi Shi, Hongtu Zhu, Mar Sanchez, Martin Styner, Marc Niethammer (2010). DTI Longitudinal Atlas Construction as an Average of Growth Models. MICCAI, International Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data.

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• Huai-Ping Lee, Mark Foskey, Marc Niethammer, Ming C. Lin (2010). Physically-based deformable image registration with material property and boundary condition estimation. Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April, 2010.

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• Xiaoxiao Liu, Bradley C. Davis, Marc Niethammer, Stephen M. Pizer, Gigkas S. Mageras (2010). Prediction-driven Respiratory Motion Atlas Formation for 4D Image-guided Radiation Therapy in Lung. MICCAI, International Workshop on Pulmonary Image Analysis.

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• Marc Niethammer, Yundi Shi, Sami Benzaid, Mar Sanchez, Martin Styner (2010). Robust model-based transformation and averaging of diffusion weighted images - applied to diffusion weighted atlas construction. MICCAI, International Workshop on Computational Diffusion MRI (CDMRI10).

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• Peter Karasev, James G. Malcolm, Marc Niethammer, Ron Kikinis, Allen R. Tannenbaum (2010). User-driven 3D mesh region targeting. Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, San Diego, California, United States, 13-18 February 2010.

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• Emel Kaplan, Jiang-Yong Min, Qingen Ke, Yu Chen, Marc Niethammer, Jamal S Rana, Sohail Malek, Freek W A Verheugt, James P Morgan (2009). Calcium and cyclic nucleotides affect TNF-alpha-induced stem cell migration.. Biochemical and biophysical research communications.

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• James J Levitt, Martin Styner, Marc Niethammer, Sylvain Bouix, Min-Seong Koo, Martina M Voglmaier, Chandlee C Dickey, Margaret A Niznikiewicz, Ron Kikinis, Robert W McCarley, Martha E Shenton (2009). Shape abnormalities of caudate nucleus in schizotypal personality disorder.. Schizophrenia research.

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• Marc Macenko, Marc Niethammer, J. S. Marron, David Borland, John T. Woosley, Xiaojun Guan, Charles Schmitt, Nancy E. Thomas (2009). A Method for Normalizing Histology Slides for Quantitative Analysis. Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009.

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• Gabriel L. Hart, Christopher Zach, Marc Niethammer (2009). An optimal control approach for deformable registration. IEEE Conference on Computer Vision and Pattern Recognition, CVPR Workshops 2009, Miami, FL, USA, 20-25 June, 2009.

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• Marc Niethammer, Gabriel L. Hart, Christopher Zach (2009). An optimal control approach for the registration of image time-series. Proceedings of the 48th IEEE Conference on Decision and Control, CDC 2009, combined withe the 28th Chinese Control Conference, December 16-18, 2009, Shanghai, China.

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• Christopher Zach, Marc Niethammer, Jan-Michael Frahm (2009). Continuous maximal flows and Wulff shapes: Application to MRFs. 2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2009), 20-25 June 2009, Miami, Florida, USA.

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• Ipek Oguz, Marc Niethammer, Joshua E. Cates, Ross T. Whitaker, P. Thomas Fletcher, Clement Vachet, Martin Styner (2009). Cortical Correspondence with Probabilistic Fiber Connectivity. Information Processing in Medical Imaging, 21st International Conference, IPMI 2009, Williamsburg, VA, USA, July 5-10, 2009. Proceedings.

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• Christopher Zach, Liang Shan, Marc Niethammer (2009). Globally Optimal Finsler Active Contours. Pattern Recognition, 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings.

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• Martin Reuter, Franz-Erich Wolter, Martha Elizabeth Shenton, Marc Niethammer (2009). Laplace-Beltrami eigenvalues and topological features of eigenfunctions for statistical shape analysis. Comput. Aided Des..

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• Emilie Gerardin, Gaël Chételat, Marie Chupin, Rémi Cuingnet, Béatrice Desgranges, Hosung Kim, Marc Niethammer, Bruno Dubois, Stéphane Lehéricy, Line Garnero, Francis Eustache, Olivier Colliot (2009). Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. NeuroImage.

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• Marc Niethammer, Christopher Zach, John Melonakos, Allen R. Tannenbaum (2009). Near-tubular fiber bundle segmentation for diffusion weighted imaging: Segmentation through frame reorientation. NeuroImage.

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• Aristotle N. Voineskos, Lauren J. O'Donnell, Nancy J. Lobaugh, Douglas Markant, Stephanie Ameis, Marc Niethammer, Benoit H. Mulsant, Bruce G. Pollock, James L. Kennedy, Carl-Fredrik Westin, Martha Elizabeth Shenton (2009). Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography. NeuroImage.

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• Christopher Zach, David Gallup, Jan-Michael Frahm, Marc Niethammer (2008). Fast Global Labeling for Real-Time Stereo Using Multiple Plane Sweeps. Proceedings of the Vision, Modeling, and Visualization Conference 2008, VMV 2008, Konstanz, Germany, October 8-10, 2008.

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• Marc Niethammer, Patricio A. Vela, Allen R. Tannenbaum (2008). Geometric Observers for Dynamically Evolving Curves. IEEE Trans. Pattern Anal. Mach. Intell..

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• Patricio A. Vela, Marc Niethammer, Gallagher Pryor, Allen R. Tannenbaum, Robert Butts, Donald Washburn (2008). Knowledge-Based Segmentation for Tracking Through Deep Turbulence. IEEE Trans. Control. Syst. Technol..

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• Santiago Aja-Fernández, Marc Niethammer, Marek Kubicki, Martha Elizabeth Shenton, Carl-Fredrik Westin (2008). Restoration of DWI Data Using a Rician LMMSE Estimator. IEEE Trans. Medical Imaging.

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• Yogesh Rathi, Samuel Dambreville, Marc Niethammer, James G. Malcolm, James J. Levitt, Martha Elizabeth Shenton, Allen R. Tannenbaum (2008). Segmenting images analytically in shape space. Medical Imaging 2008: Image Processing, San Diego, California, United States, 16-21 February 2008.

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• Hosung Kim, Marc Niethammer, Boris C. Bernhardt, Sylvain Bouix, Neda Bernasconi, Andrea Bernasconi (2008). SPHARM detects hippocampal subfield pathology in temporal lobe epilepsy. Proceedings of the ISMRM.

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• Vasana Mohan, Ganesh Sundaramoorthi, John Melonakos, Marc Niethammer, Marek Kubicki, Allen Tannenbaum (2008). Tubular Surface Evolution for Segmentation of the Cingulum Bundle from DW-MRI. Foundations of Computational Anatomy Workshop, MICCAI.

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• Samuel Dambreville, Marc Niethammer, Anthony J. Yezzi, Allen R. Tannenbaum (2007). A Variational Framework Combining Level-sets and Thresholding. Proceedings of the British Machine Vision Conference 2007, University of Warwick, UK, September 10-13, 2007.

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• Samuel Dambreville, Marc Niethammer, Anthony J. Yezzi, Allen R. Tannenbaum (2007). A variational segmentation framework using active contours and thresholding. Signal and Image Processing (SIP 2007), Proceedings of the IASTED International Conference, August 20-22, 2007, Honolulu, HI, USA.

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• Vandana Mohan, John Melonakos, Allen R. Tannenbaum, Marc Niethammer, Marek Kubicki (2007). Finsler Level Set Segmentation for Imagery in Oriented Domains. Proceedings of the British Machine Vision Conference 2007, University of Warwick, UK, September 10-13, 2007.

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• John Melonakos, Vandana Mohan, Marc Niethammer, Kate Smith, Marek Kubicki, Allen R. Tannenbaum (2007). Finsler Tractography for White Matter Connectivity Analysis of the Cingulum Bundle. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part I.

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• Gordon L. Kindlmann, Raúl San José Estépar, Marc Niethammer, Steven Haker, Carl-Fredrik Westin (2007). Geodesic-Loxodromes for Diffusion Tensor Interpolation and Difference Measurement. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part I.

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• Marc Niethammer, Martin Reuter, Franz-Erich Wolter, Sylvain Bouix, Niklas Peinecke, Min-Seong Koo, Martha Elizabeth Shenton (2007). Global Medical Shape Analysis Using the Laplace-Beltrami Spectrum. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part I.

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• Martin Reuter, Marc Niethammer, Franz-Erich Wolter, Sylvain Bouix, Martha Elizabeth Shenton (2007). Global Medical Shape Analysis Using the Volumetric Laplace Spectrum. 2007 International Conference on Cyberworlds, CW 2007, Hannover, Germany, October 24-26, 2007.

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• John Melonakos, Marc Niethammer, Vandana Mohan, Marek Kubicki, James V. Miller, Allen R. Tannenbaum (2007). Locally-Constrained Region-Based Methods for DW-MRI Segmentation. IEEE 11th International Conference on Computer Vision, ICCV 2007, Rio de Janeiro, Brazil, October 14-20, 2007.

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• Marc Niethammer, Sylvain Bouix, Santiago Aja-Fernández, Carl-Fredrik Westin, Martha Elizabeth Shenton (2007). Outlier Rejection for Diffusion Weighted Imaging. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part I.

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• Delphine Nain, Martin Andreas Styner, Marc Niethammer, James J. Levitt, Martha Elizabeth Shenton, Guido Gerig, Aaron F. Bobick, Allen R. Tannenbaum (2007). Statistical Shape Analysis of Brain Structures Using Spherical Wavelets. Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007.

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• Helge Kuttig, Marc Niethammer, Stefan Hurlebaus, Laurence J. Jacobs (2006). Model-based analysis of dispersion curves using chirplets. The Journal of the Acoustical Society of America.

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• Eric Pichon, Delphine Nain, Marc Niethammer (2006). A Laplace equation approach for shape comparison. Medical Imaging 2006: Visualization, Image-Guided Procedures, and Display, San Diego, California, United States, 11-16 February 2006.

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• Marc Niethammer, Allen R. Tannenbaum, Sigurd B. Angenent (2006). Dynamic active contours for visual tracking. IEEE Trans. Autom. Control..

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• Marc Niethammer, Sylvain Bouix, Carl-Fredrik Westin, Martha Elizabeth Shenton (2006). Fiber Bundle Estimation and Parameterization. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2006, 9th International Conference, Copenhagen, Denmark, October 1-6, 2006, Proceedings, Part II.

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• Oliver Kotte, Marc Niethammer, Laurence J. Jacobs (2006). Lamb Wave Characterization by Differential Reassignment and Nonlinear Anisotropic Diffusion. NDT & E International.

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• Marc Niethammer, Raul San Jose Estepar, Sylvain Bouix, Martha Shenton, Carl-Fredrik Westin (2006). On Diffusion Tensor Estimation. Proceedings of the International Engineering in Medicine and Biology Conference (EMBC).

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• Marc Niethammer, William D. Kalies, Konstantin Mischaikow, Allen R. Tannenbaum (2006). On the detection of simple points in higher dimensions using cubical homology. IEEE Trans. Image Process..

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• Patricio A. Vela, Marc Niethammer, James Malcolm, Allen Tannenbaum (2005). Closed Loop Visual Tracking Using Observer-Based Dynamic Active Contours. Proceedings of the Conference on Guidance Navigation and Control.

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• Marc Niethammer, Patricio A. Vela, Allen Tannenbaum (2005). Geometric Observers for Dynamically Evolving Curves. Proceedings of the Conference on Decision and Control.

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• Marc Niethammer, Patricio A. Vela, Allen R. Tannenbaum (2005). On the Evolution of Vector Distance Functions of Closed Curves. Int. J. Comput. Vis..

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• Jincheol Ha, Christopher Alvino, Gallagher Pryor, Marc Niethammer, Eric Johnson, Allen Tannenbaum (2004). Active Contours and Optical Flow for Automatic Tracking of Flying Vehicles. Proceedings of the American Control Conference.

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• Marc Niethammer, Santiago Betelú, Guillermo Sapiro, Allen R. Tannenbaum, Peter J. Giblin (2004). Area-Based Medial Axis of Planar Curves. Int. J. Comput. Vis..

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• Marc Niethammer, Allen R. Tannenbaum (2004). Dynamic Geodesic Snakes for Visual Tracking. 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2004), with CD-ROM, 27 June - 2 July 2004, Washington, DC, USA.

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• Marc Niethammer (2004). Dynamic Level Sets for Visual Tracking.

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• Ruediger Benz, Marc Niethammer, Stefan Hurlebaus, Laurence J. Jacobs (2003). Localization of notches with Lamb waves. The Journal of the Acoustical Society of America.

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• Marc Niethammer, Eric Pichon, Allen R. Tannenbaum, Peter J. Mucha (2003). A stokes flow boundary integral measurement of tubular structure cross sections in two dimensions. Proceedings of the 2003 International Conference on Image Processing, ICIP 2003, Barcelona, Catalonia, Spain, September 14-18, 2003.

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• Eric Pichon, Marc Niethammer, Guillermo Sapiro (2003). Color histogram equalization through mesh deformation. Proceedings of the 2003 International Conference on Image Processing, ICIP 2003, Barcelona, Catalonia, Spain, September 14-18, 2003.

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• Marc Niethammer, Allen Tannenbaum (2003). Dynamic level sets for visual tracking. Proceedings of the Conference on Decision and Control.

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• Konstantin Mischaikow, Pawel Pilarczyk, William D. Kalies, Marc Niethammer, Andrew Stein, Allen R. Tannenbaum (2002). Analysis of blood vessel topology by cubical homology. Proceedings of the 2002 International Conference on Image Processing, ICIP 2002, Rochester, New York, USA, September 22-25, 2002.

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• Stefan Hurlebaus, Marc Niethammer, Laurance J. Jacobs, Christine Valle (2001). Automated methodology to locate notches with Lamb waves. Acoustic Research Letters Online.

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• Christine Valle, Marc Niethammer, Jianmin Qu, Laurence J. Jacobs (2001). Crack characterization using guided circumferential waves. Journal of the Acoustical Society of America.

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• Marc Niethammer, Patrick H. Menold, Frank Allgower (2001). Parameter and derivative estimation for nonlinear continuous-time system identification. Proceedings of the 5 th IFAC Symposium on Nonlinear Systems, (NOLCOS 01).

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• Marc Niethammer, Laurence J. Jacobs, Jianmin Qu, Jacek Jarzynski (2001). Time-frequency representations of Lamb waves. Journal of the Acoustical Society of America.

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• Marc Niethammer, Laurence J. Jacobs, Jianmin Qu, Jacek Jarzynski (2000). Time-frequency representation of Lamb waves using the reassigned spectrogram. Acoustic Research Letters Online.

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